Publications

Articles

• Acceleration of Molecular Simulations by Parametric Time-Lagged tSNE Metadynamics

  HRADISKÁ Helena KUREČKA Martin BERÁNEK Jan TEDESCHI Guglielmo VIŠŇOVSKÝ Vladimír KŘENEK Aleš SPIWOK Vojtěch

  Article in Periodical

  The Journal of Physical Chemistry B, year: 2024, DOI

• AlphaFind: discover structure similarity across the proteome in AlphaFold DB

  PROCHÁZKA David SLANINÁKOVÁ Terézia OĽHA Jaroslav ROŠINEC Adrián GREŠOVÁ Katarína JÁNOŠOVÁ Miriama ČILLÍK Jakub PORUBSKÁ Jana SVOBODOVÁ Radka DOHNAL Vlastislav ANTOL Matej

  Article in Periodical

• CzeGPT-2 – Training New Model for Czech Generative Text Processing Evaluated with the Summarization Task

  HÁJEK Adam HORÁK Aleš

  Article in Periodical

  IEEE ACCESS, year: 2024, volume: 2024, edition: 12, DOI

• Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment

  VÍTEČEK Jan VÍTEČKOVÁ WÜNSCHOVÁ Andrea THALEROVÁ Sandra GULATI Sumeet KUBALA Lukáš CAPANDOVÁ Michaela HAMPL Aleš MIKULÍK Robert

  Article in Periodical

  PLOS ONE, year: 2024, volume: 6, edition: 19, DOI

• Forensic experts' view of forensic-ready software systems: A qualitative study

  DAUBNER Lukáš BÜHNOVÁ Barbora PITNER Tomáš

  Article in Periodical

  Journal of Software: Evolution and Process, year: 2024, volume: 36, edition: 5, DOI

• Getting your DUCs in a row - standardising the representation of Digital Use Conditions

  JEANSON Francis GIBSON Spencer J ALPER Pinar BERNIER Alexander WOOLLEY J Patrick MIETCHEN Daniel STRUG Andrzej BECKER Regina KAMERLING Pim GONZALEZ Maria del Carmen Sanchez MAH Nancy NOVAKOWSKI Ann WILKINSON Mark D BENHAMED Oussama Mohammed LANDI Annalisa KROG Georg Philip MÜLLER Heimo RIAZ Umar VEAL Colin HOLUB Petr VAN ENCKEVORT Esther BROOKES Anthony J

  Article in Periodical

  SCIENTIFIC DATA, year: 2024, volume: 11, edition: 1, DOI

• ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

  Article in Periodical

• Chemically peculiar stars on the pre-main sequence

  KUEß Lukas PAUNZEN Ernst FALTOVÁ Nikola JADLOVSKÝ Daniel LABAJ Matúš MESARČ Marko MONDAL Prapti PRIŠEGEN Michal RAMEZANI Tahereh SUPÍKOVÁ Johana SVAČINKOVÁ Kateřina VÍTKOVÁ Michaela XIA Caiyun BERNHARD Klaus HÜMMERICH Stefan

  Article in Periodical

• Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities

  OHMANN Christian PANAGIOTOPOULOU Maria CANHAM Steve HOLUB Petr MAJCEN Kurt SAUNDERS Gary FRATELLI Maddalena TANG Jing GRIBBON Philip KARKI Reagon KLEEMOLA Mari MOILANEN Katja BROEDER Daan DAELEMANS Walter FIVEZ Pieter

  Article in Periodical

  International Journal of Metadata, Semantics and Ontologies, year: 2024, volume: 16, edition: 4

• Quantum Chemistry-Based Prediction of Electron Ionization Mass Spectra for Environmental Chemicals

  HECHT Helge ROJAS VERASTEGUI Wudmir Yudy AHMAD Zargham KŘENEK Aleš KLÁNOVÁ Jana PRICE Elliott James

  Article in Periodical

  Analytical chemistry, year: 2024, volume: 96, edition: 33, DOI