Publications

Articles

• Caver Web 2.0: analysis of tunnels and ligand transport in dynamic ensembles of proteins

  MARQUES Sérgio Manuel BORKO Simeon VÁVRA Ondřej DVORSKÝ Jan KOHOUT Petr KABOUREK Petr HEJTMÁNEK Lukáš DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Nucleic Acids Research, year: 2025, volume: 53, edition: May 2025, DOI

• Estimating resource budgets to ensure autotuning efficiency

  OĽHA Jaroslav HOZZOVÁ Jana ANTOL Matej FILIPOVIČ Jiří

  Article in Periodical

  PARALLEL COMPUTING, year: 2025, volume: 123, edition: March, DOI

• Genomic data sharing in research across Europe: legal challenges and upcoming opportunities within the European Health Data Space

  ROYO Romina GARCIA Eva SCHLÜNDER Irene HILMARSEN Christina KIELSHOLM THOMSEN Mette CAUËT Emilie KOK JENSEN Simon GIARDINA Simona HEBRANT Aline RAICEVIC TOUNGOUZ Gordana VAN DEN BULCKE Marc ARENAS Juan FYNBO CHRISTIANSEN Christian HOVIG Eivind HOLUB Petr VALENCIA Alfonso CAPELLA-GUTIERREZ Salvador

  Article in Periodical

  EUROPEAN JOURNAL OF PUBLIC HEALTH, year: 2025, volume: 35, edition: Supplement_3, DOI

• GOLEM: A tool for visualizing the distribution of Gene regulatOry eLEMents within the plant promoters with a focus on male gametophyte

  NEVOSÁD Lukáš KLODOVÁ Božena RUDOLF Jiří RAČEK Tomáš PŘEROVSKÁ Tereza KUSOVÁ Alžbeta SVOBODOVÁ Radka HONYS David PROCHÁZKOVÁ SCHRUMPFOVÁ Petra

  Article in Periodical

  Plant Journal, year: 2025, volume: 121, edition: 5, DOI

• Gromacs MetaDump: a tool for extracting GROMACS simulation metadata

  ROŠINEC Adrián SLANINÁKOVÁ Terézia PAVLÍK Tomáš RANDIAK Róbert SVOBODA Tomáš RAČEK Tomáš BUČEKOVÁ Gabriela SCHINDLER Ondřej ANTOL Matej KŘENEK Aleš BERKA Karel SVOBODOVÁ Radka

  Article in Periodical

  Journal of Cheminformatics, year: 2025, volume: 17, edition: 1, DOI

• How many (distinguishable) classes can we identify in single-particle analysis?

  LAUZIRIKA Oier PERNICA Martin HERREROS David RAMÍREZ-APORTELA Erney KRIEGER James GRAGERA Marcos ICETA Mikel CONESA Pablo FONSECA Yunior JIMÉNEZ Jorge FILIPOVIČ Jiří CARAZO Jose Maria SORZANO Carlos Oscar

  Article in Periodical

  ACTA CRYSTALLOGRAPHICA SECTION D, year: 2025, volume: 81, edition: 10, DOI

• Inhaled Lead Nanoparticles Enter the Brain through the Olfactory Pathway and Induce Neurodegenerative Changes Resembling Tauopathies

  JEDLIČKOVÁ Adriena KRISTEKOVÁ Daniela HUSÁKOVÁ Zuzana COUFALÍK Pavel VRLÍKOVÁ Lucie SMUTNÁ Tereza CAPANDOVÁ Michaela ALEXA Lukáš LUSKOVÁ Denisa KŘŮMAL Kamil JAKEŠOVÁ Veronika VEČEŘA Zbyněk ZEZULA Nikodém KANICKÝ Viktor HAMPL Aleš VACULOVIČ Tomáš MIKUŠKA Pavel DUMKOVÁ Jana BUCHTOVÁ Marcela

  Article in Periodical

  ACS Nano, year: 2025, volume: 19, edition: 13, DOI

• Integration, Cataloguing and Management of Biobanking and Clinical Data Using FAIR Genomes Metadata Schema

  KACOVÁ Radoslava HOUFEK Tomáš HORKÝ Ondřej TOMÁŠIK Radovan KURÁŇ Jan RŮŽIČKA Michal HRSTKA Roman NOVÁČEK Vít DUDOVÁ Zdenka

  Article in Periodical

  Data Intelligence, year: 2025, volume: 2025, edition: 1, DOI

• Joint-Dataset Learning and Cross-Consistent Regularization for Text-to-Motion Retrieval

  MESSINA Nicola SEDMIDUBSKÝ Jan FALCHI Fabrizio REBOK Tomáš

  Article in Periodical

  ACM Transactions on Multimedia Computing, Communications, and Applications, year: 2025, DOI

• Lessons learned from European health data projects with cancer use cases: implementation of health standards and internet of things semantic interoperability

  GYRARD Amelie ABEDIAN Somayeh GRIBBON Philip MANIAS George RICK van Nuland ZATLOUKAL Kurt NICOLAE Irina Emilia DANCIU Gabriel NECHIFOR Septimiu MARTI-BONMATI Luis MALLOL Pedro DALMIANI Stefano AUTEXIER Serge JENDROSSEK Mario AVRAMIDIS Ioannis EVA Garcia Alvarez HOLUB Petr BLANQUER Ignacio BODEN Anna HUSSEIN Rada

  Article in Periodical

  Journal of Medical Internet Research, year: 2025, volume: 27, DOI