Publications

Articles

• miRBench: novel benchmark datasets for microRNA binding site prediction that mitigate against prevalent microRNA frequency class bias

  SAMMUT Stephanie GREŠOVÁ Katarína TZIMOTOUDIS Dimosthenis MARŠÁLKOVÁ Eva ČECHÁK David ALEXIOU Panagiotis

  Article in Periodical

  Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, year: 2025, volume: 41, edition: 1, DOI

• MOLEonline: a web-based tool for analysing channels, tunnels and pores (2025 update)

  RAČEK Tomáš VEĽKÝ Dušan BUČEKOVÁ Gabriela SCHINDLER Ondřej HUTAŘOVÁ VAŘEKOVÁ Ivana ŠPAČKOVÁ Anna BAZGIER Václav BERKA Karel SVOBODOVÁ Radka

  Article in Periodical

  BIOINFORMATICS, year: 2025, DOI

• PDBCharges: Quantum-Mechanical Partial Atomic Charges for PDB Structures

  SCHINDLER Ondřej SVOBODA Tomáš ROŠINEC Adrián RAČEK Tomáš BUČEKOVÁ Gabriela TICHÝ Dominik BERKA Karel SVOBODOVÁ Radka

  Article in Periodical

  Nucleic Acids Research, year: 2025, volume: 53, edition: W1, DOI

• Tumor Suppressor miR-34a: Potential Biomarker of TACE Response in HCC

  ZAVADIL Jan JURÁČEK Jaroslav ČECHOVÁ Barbora ROHAN Tomáš HUSTÝ Jakub SLABÝ Ondřej LITSCHMANNOVÁ Martina UHER Michal GOLDBERG S. Nahum ANDRAŠINA Tomáš

  Article in Periodical

  CARDIOVASCULAR AND INTERVENTIONAL RADIOLOGY, year: 2025, volume: 48, edition: 1, DOI

• User journeys in cross-European secondary use of health data: insights ahead of the European Health Data Space

  FORSTER Rachel B GARCIA ALVAREZ Eva ZUCCO Adrian G BERNAL-DELGADO Enrique DIALLO Gayo ESTUPINÁN-ROMERO Francisco GANNA Andrea GORMAN-ASAL Madeleine HILMARSEN Christina HOLUB Petr HOEYER Klaus RAWAT Arti ROD Naja H VUORINEN Anna-Leena VARGA Tibor V

  Article in Periodical

  EUROPEAN JOURNAL OF PUBLIC HEALTH, year: 2025, volume: 35, edition: Supplement_3, DOI

• Using Polycaprolactone Nanofibers for the Proof-of-Concept Construction of the Alveolar-Capillary Interface

  CAPANDOVÁ Michaela SEDLÁKOVÁ Veronika VORÁČ Zbyněk KOTASOVÁ Hana DUMKOVÁ Jana MORÁŇ Lukáš JAROŠ Josef ANTOL Matej BOHAČIAKOVÁ Dáša HAMPL Aleš

  Article in Periodical

  JOURNAL OF BIOMEDICAL MATERIALS RESEARCH PART A, year: 2025, volume: 113, edition: 1, DOI

• Úvod do strojového učení pro patology

  BRÁZDIL Tomáš KUKUČKA Adam MUSIL Vít NENUTIL Rudolf HOLUB Petr

  Article in Periodical

  Ceskoslovenska Patologie, year: 2025, volume: 61, edition: 1

Conference proceedings

• Engine-Agnostic Model Hot-Swapping for Cost-Effective LLM Inference

  STOYANOV Radostin SPIŠAKOVÁ Viktória REBER Adrian ARMOUR Wesley COPIK Marcin BRUNO Rodrigo

  Article in Proceedings

  Year: 2025

• On the Costs and Benefits of Learned Indexing for Dynamic High-Dimensional Data

  SLANINÁKOVÁ Terézia OĽHA Jaroslav PROCHÁZKA David ANTOL Matej DOHNAL Vlastislav

  Article in Proceedings

  Big Data Analytics and Knowledge Discovery 27th International Conference, DaWaK 2025, Bangkok, Thailand, August 25–27, 2025, Proceedings, year: 2025

• Scaling Learned Metric Index to 100M Datasets

  PROCHÁZKA David SLANINÁKOVÁ Terézia ČERŇANSKÝ Jozef OĽHA Jaroslav ANTOL Matej DOHNAL Vlastislav

  Article in Proceedings

  SIMILARITY SEARCH AND APPLICATIONS, SISAP 2024, year: 2025